RepTate Command Line Tutorial¶

Examples of use of RepTate using the Command Line interpreter and batch.

Tutorial command line (CL) files can be found in the tests/ folder. They can be run in batch mode or in interactive mode.

  • To run them in interactive mode, introduce the lines in the file (except the comments, which start with # and the line console batch) one by one and wait for the results.

  • To run them in batch mode, you can execute the tutorial of your choice, e.g.: -b < tutorial/TEST_WLFShift.txt # Linux or Mac

    or: -b < tutorial\TEST_WLFShift.txt # Windows

(the difference is the use of backslash \ instead of slash /) and the output will be shown in the command line. In batch mode, no graphs or plots are shown.